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Deplancke's Lab

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  1. BRB-seqTools BRB-seqTools Public

    Suite of tools for processing BRB-seq data

    Java 31 10

  2. ASAP ASAP Public

    ASAP : Automated Single-cell Analysis Pipeline

    28 10

  3. ChromatinHD ChromatinHD Public

    High-definition modeling of chromatin + transcriptomics data

    Python 26 1

  4. Live-seq Live-seq Public

    Live-seq

    R 9 4

  5. TF-seq TF-seq Public

    Material and source code for TF-seq manuscript

    Jupyter Notebook 4 1

  6. Chromatin_modules Chromatin_modules Public

    Chromatin Modules across cell types

    Jupyter Notebook 4

Repositories

Showing 10 of 40 repositories
  • asap_web Public

    ASAP container for hosting the web portal

    DeplanckeLab/asap_web's past year of commit activity
    Ruby 2 GPL-3.0 0 0 0 Updated Oct 6, 2026
  • IRIS Public
    DeplanckeLab/IRIS's past year of commit activity
    Jupyter Notebook 0 GPL-3.0 1 0 0 Updated Oct 1, 2026
  • asap_run Public

    ASAP container for running all pipeline code

    DeplanckeLab/asap_run's past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Sep 11, 2026
  • ECCB-2026 Public

    SIB Community Days - Single-cell and spatial data FAIRification, community standards and training

    DeplanckeLab/ECCB-2026's past year of commit activity
    1 GPL-3.0 0 0 0 Updated Sep 2, 2026
  • scfair Public

    an initiative to standardize single-cell genomics data and promote findable, accessible, interoperable, and reusable single-cell data.

    DeplanckeLab/scfair's past year of commit activity
    Ruby 0 1 0 0 Updated Aug 30, 2026
  • meSMiLEseq Public

    Material and source code for meSMiLEseq paper

    DeplanckeLab/meSMiLEseq's past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated May 10, 2026
  • FastReadCounter Public

    Tool for fast counting of reads from BAM file into genomic ranges (GTF, BED, VCF)

    DeplanckeLab/FastReadCounter's past year of commit activity
    Java 0 GPL-3.0 0 2 0 Updated Apr 8, 2026
  • TFseqTools Public

    A suite of tools for the pre-processing of TF-seq data

    DeplanckeLab/TFseqTools's past year of commit activity
    Java 0 GPL-3.0 0 0 0 Updated Mar 20, 2026
  • Neuro_Droso_ND75KD Public

    ND75KD project

    DeplanckeLab/Neuro_Droso_ND75KD's past year of commit activity
    HTML 0 GPL-3.0 0 0 0 Updated Mar 11, 2026
  • ASAP Public

    ASAP : Automated Single-cell Analysis Pipeline

    DeplanckeLab/ASAP's past year of commit activity
    28 GPL-3.0 10 10 0 Updated Mar 10, 2026