Issues

• Error to get geneInter and comp

  StatBiomed/SpatialDM#40 · Filter by author fisher-ww opened on Jan 23, 2026
  2

• KeyError: "Values ['HLA-DQB1'], from ['HLA-DQB1'], are not valid obs/ var names or indices."

  StatBiomed/SpatialDM#39 · Filter by author ChenPeizhan opened on Dec 17, 2025

• AttributeError: 'csr_matrix' object has no attribute 'A'

  StatBiomed/SpatialDM#36 · Filter by author moor2562 opened on May 1, 2025
  1

• Extracting top K most likely sender and receiver cell type

  StatBiomed/SpatialDM#35 · Filter by author HarryZhang1224 opened on Feb 12, 2025

• planning for upgrading in the next 10 days

  StatBiomed/SpatialDM#33 · Filter by author huangyh09 opened on Oct 30, 2024
  1

  

• Memory limit during sdm.spatialdm_local

  StatBiomed/SpatialDM#32 · Filter by author Jiayi-Zheng opened on Sep 7, 2024
  1

• Question about global permutation test

  StatBiomed/SpatialDM#31 · Filter by author sealx017 opened on Aug 22, 2024

• InvalidIndexError when running sdm.extract_lr(adata, 'human', min_cell=3)

  StatBiomed/SpatialDM#30 · Filter by author Smilenone opened on Apr 7, 2024
  2

• The process of 'Spatial Clustering of Local Spots' using SpatialDE is taking an excessive amount of time. Could I have overlooked some parameters?

  StatBiomed/SpatialDM#29 · Filter by author ABU-TO opened on Jan 8, 2024
  2

• I keep getting error when running spatialdm_local AttributeError: 'NoneType' object has no attribute 'to_adata'

  StatBiomed/SpatialDM#28 · Filter by author smk5g5 opened on Jan 3, 2024
  6

• Bugs discovery for single-cell level spatialDM

  StatBiomed/SpatialDM#25 · Filter by author HelloWorldLTY opened on Nov 7, 2023
  5

• reading in h5ad file

  StatBiomed/SpatialDM#23 · Filter by author anamaria-uofg opened on Jul 13, 2023
  1

• Help with the simulations from the paper

  StatBiomed/SpatialDM#22 · Filter by author hiraksarkar opened on Jul 9, 2023
  4

• Code Update Request: Avoid 'np.float' Deprecation Error in melanoma.ipynb

  StatBiomed/SpatialDM#20 · Filter by author yuifu opened on Jul 8, 2023
  6

  

• spatialdm_global does not work with a list of specified index, pair_selection_matrix would change adata

  StatBiomed/SpatialDM#6 · Filter by author wyq977 opened on Jan 5, 2023
  1

• weight_matrix with n_nearest_neighbors and n_neighbors

  StatBiomed/SpatialDM#5 · Filter by author wyq977 opened on Jan 5, 2023
  3