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@YuLab-SMU

Bioinformatics Group @ SMU

Research group led by Prof. Guangchuang Yu in School of Basic Medical Sciences, Southern Medical University

长期招聘博士后,欢迎咨询。


The research group has developed a variety of widely recognized bioinformatics tools in the fields of biomedical knowledge mining and knowledge discovery (e.g., clusterProfiler, GOSemSim, DOSE), phylogenetic data integration and visualization (e.g., treeio, ggtree, ggtreeExtra), metagenomic data analysis (e.g., MicrobiotaProcess) and data visualization (e.g., ggbreak, aplot, enrichplot, ChIPseeker), etc., to help biologists explore and understand data.

Links

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  1. clusterProfiler clusterProfiler Public

    📊 A universal enrichment tool for interpreting omics data

    R 1.2k 268

  2. ggtree ggtree Public

    🎄Visualization and annotation of phylogenetic trees

    R 935 183

  3. aisdk aisdk Public

    🤖 A production-grade framework for building AI-powered applications in R.

    R 76 8

  4. Rho Rho Public

    an agent-native desktop workbench for R

    TypeScript 33 10

  5. SVP SVP Public

    Spatially Variable Profiler

    R 12

  6. sclet sclet Public

    A State-Aware Single-Cell and Spatial Transcriptomics Toolkit for SingleCellExperiment

    R 24 8

Repositories

Showing 10 of 143 repositories
  • enrichit Public

    C++ Implementations of Functional Enrichment Analysis

    YuLab-SMU/enrichit's past year of commit activity
    R 4 5 0 0 Updated Oct 7, 2026
  • sclet Public

    A State-Aware Single-Cell and Spatial Transcriptomics Toolkit for SingleCellExperiment

    YuLab-SMU/sclet's past year of commit activity
    R 24 8 5 0 Updated Oct 7, 2026
  • ygc-blog Public

    Guangchuang Yu's Blog

    YuLab-SMU/ygc-blog's past year of commit activity
    TypeScript 0 MIT 0 0 0 Updated Oct 6, 2026
  • excercise Public
    YuLab-SMU/excercise's past year of commit activity
    HTML 0 1 0 0 Updated Oct 6, 2026
  • biomedical-knowledge-mining-book Public

    📖 Biomedical knowledge mining using GOSemSim and clusterProfiler

    YuLab-SMU/biomedical-knowledge-mining-book's past year of commit activity
    TeX 96 30 0 0 Updated Oct 6, 2026
  • ChIPseeker Public

    🎯 ChIP peak Annotation, Comparison and Visualization

    YuLab-SMU/ChIPseeker's past year of commit activity
    R 259 77 102 0 Updated Oct 6, 2026
  • epiSeeker Public

    epiSeeker: an R package for Annotation, Comparison and Visualization of multi-omics epigenetic data

    YuLab-SMU/epiSeeker's past year of commit activity
    R 0 2 0 1 Updated Oct 6, 2026
  • ggtangle Public

    Draw Network with Data

    YuLab-SMU/ggtangle's past year of commit activity
    R 10 3 0 0 Updated Oct 5, 2026
  • enrichplot Public

    Visualization of Functional Enrichment Result

    YuLab-SMU/enrichplot's past year of commit activity
    R 260 75 67 0 Updated Oct 5, 2026
  • DOSE Public

    😷 Disease Ontology Semantic and Enrichment analysis

    YuLab-SMU/DOSE's past year of commit activity
    R 125 34 0 0 Updated Oct 4, 2026