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@lcmd-epfl

Laboratory for Computational Molecular Design

Molecular generation: the MolCraft family

MolCraftDiffusion logo
Authors:  T. Worakul, M. Azzouzi, M. D. Wodrich, C. Corminboeuf
Description: A unified framework for 3D molecular generative models (de novo, property-directed, structure-guided, shape-, pocket-, fragment- and pharmacophore-conditioned design) covering data preparation, training, guided generation and evaluation behind one CLI.
AutomaticMolCraft logo
Authors:  T. Worakul, O. Hernandez-Cuellar, C. Corminboeuf
Description: A locally deployed, no-code browser platform built on MolCraftDiffusion for running generation and training, curating datasets, and exploring structure–property relationships.

Catalyst discovery: the NaviCat platform

NaviCat logo
Authors:  LCMD
Description: A hub collecting LCMD tools and databases for digital catalyst optimization and discovery, including:
NaviCatGA logo
Authors:  R. Laplaza, S. Gallarati, C. Corminboeuf
Description: A flexible, pure-Python genetic algorithm for catalyst optimization over SMILES, SELFIES or 3D structures.
volcanic logo
Authors:  R. Laplaza, S. Das, M. D. Wodrich, C. Corminboeuf
Description: Automatically builds molecular volcano plots and activity maps for homogeneous catalysis from reaction energy profiles.
mikimo logo
Authors:  T. Worakul, R. Laplaza, S. Das, M. D. Wodrich, C. Corminboeuf
Description: Performs microkinetic modeling of homogeneous catalytic reactions from energy data and builds microkinetic volcano plots and activity/selectivity maps.
ReaFS logo
Authors:  A. A. Schoepfer, R. Laplaza, J. Waser, C. Corminboeuf
Description: Tools for the development, diagnosis and visualization of multivariate linear regression models for chemical applications.

Agentic molecular design

Solitarius logo
Authors:  T. Worakul, C. Corminboeuf
Description: Describe a molecular-design goal in plain language; specialist LLM agents plan, configure, execute and analyse generative runs through MCP tools, keeping a traceable ledger from scientific intent to candidate molecules.

Other tools

cell2mol thumbnail
Authors:  O. Hernandez-Cuellar, Y. Cho, R. Laplaza, L. O. Marsh, S. Vela, C. Corminboeuf
Description: A tool to interpret crystallographic data and retrieve the connectivity, total charge, and spin of molecular complexes and their components including the oxidation state (OS) of metal atoms and the charge of ligands.
rho-predict thumbnail
Authors:  K. R. Briling, O. Hernandez-Cuellar, J. W. Abbott, M. Ceriotti, C. Corminboeuf
Description: This tool predicts the electronic density of molecules using a symmetry-adapted Gaussian process regression model.

Pinned Loading

  1. cell2mol cell2mol Public

    Encoding chemistry to interpret crystallographic data

    Python 30 6

  2. Q-stack Q-stack Public

    Stack of codes for dedicated pre- and post-processing tasks for Quantum Machine Learning (QML)

    Python 20 7

  3. NaviCat NaviCat Public

    A platform for catalyst discovery

    15

  4. EquiReact EquiReact Public

    Code to support the paper: P. van Gerwen, K. R. Briling, C. Bunne, V. R. Somnath, R. Laplaza, A. Krause, C. Corminboeuf, "3DReact: Geometric Deep Learning for Chemical Reactions", J. Chem. Inf. Mod…

    27 5

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