Issues

• Getting error in the GTDB step.

  nasa/GeneLab_Data_Processing#182 · Filter by author ankurnaqib opened on Oct 17, 2025
  3

• Error while setting up NF_MGIllumina_1.0.0

  nasa/GeneLab_Data_Processing#179 · Filter by author ankurnaqib opened on Oct 5, 2025
  1

• [bulkRNASeq] NF_RCP 2.0.0 - Custom genomes are limited to organisms found in reference_table

  nasa/GeneLab_Data_Processing#157 · Filter by author bnovak32 opened on May 23, 2025
  1

  

• [bulkRNASeq] NF_RCP 2.0.0 - post-processing fails after with user-provided runsheet_path

  nasa/GeneLab_Data_Processing#156 · Filter by author bnovak32 opened on May 23, 2025
  1

  

• [Amplicon Illumina] Issue with datasets that have multiple assays of the same target

  nasa/GeneLab_Data_Processing#149 · Filter by author jihanyehia opened on Apr 28, 2025

• [Microarray] Add option to skip DE step during processing

  nasa/GeneLab_Data_Processing#104 · Filter by author cyouh95 opened on Jul 15, 2024

• [Microarray Affymetrix] Processed data protocol

  nasa/GeneLab_Data_Processing#98 · Filter by author cyouh95 opened on Jun 7, 2024
  1

• [BulkRNASeq] Combine MultiQC reports

  nasa/GeneLab_Data_Processing#83 · Filter by author cyouh95 opened on May 15, 2024

• [Metagenomics Illumina] Some datasets have too many files in the MAGs and bins folders

  nasa/GeneLab_Data_Processing#76 · Filter by author bnovak32 opened on Apr 5, 2024

• ENSEMBL annotations not populating correctly

  nasa/GeneLab_Data_Processing#43 · Filter by author carnold-sjsu opened on Oct 9, 2023
  4

• [BulkRNASeq] Update default publish output directory when processing GLDS data

  nasa/GeneLab_Data_Processing#40 · Filter by author J-81 opened on Sep 2, 2023
  1

• [BulkRNASeq] Handle cases where distinct group names resolve to the same R safe name

  nasa/GeneLab_Data_Processing#39 · Filter by author J-81 opened on Sep 2, 2023

• [BulkRNASeq] Handle processing with experimental groups where N = 1

  nasa/GeneLab_Data_Processing#38 · Filter by author J-81 opened on Sep 2, 2023

• Add reference table support for "Euglena gracilis"

  nasa/GeneLab_Data_Processing#26 · Filter by author J-81 opened on May 2, 2023
  1

• Parallelize and optimize Wald test and group statistics

  nasa/GeneLab_Data_Processing#22 · Filter by author J-81 opened on Apr 12, 2023
  1