computational-biology

List of Computer Science courses with video lectures.

Turn any AI agent into an AI Scientist. The #1 Agent Skills library for science, used by 250,000+ scientists worldwide. 177 ready-to-use validated skills plus 100+ scientific databases covering biology, chemistry, medicine, and drug discovery. Compatible with Cursor, Claude Code, Codex, Pi, Antigravity, and the open Agent Skills standard.

Hundreds of agent skills for medical research, including protocol design, data analysis, evidence insights, and academic writing.

Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking

scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resources.

Protein Graph Library

SimTK OpenSim C++ libraries and command-line applications, and Java/Python wrapping.

WebGL accelerated JavaScript molecular graphics library

A list of schools and researchers in computational neuroscience

A comprehensive library for computational molecular biology

Working with molecular structures in pandas DataFrames

OpenChem: Deep Learning toolkit for Computational Chemistry and Drug Design Research

A Go package for engineering organisms.

A publicly-editable collection of open computational neuroscience resources

A high-performance, Pythonic language for bioinformatics

Interactive network visualization in Python and Dash, powered by Cytoscape.js

High-school research portfolio: 2 peer-reviewed publications (IEEE, IJHSR) + 3 active projects spanning quantum-inspired ML, computational biology, biomedical imaging, wildfire RL, and science-education research. Stanford Medicine, UCLA COSMOS & UCSB SRA affiliated.

Cell type annotation for single-cell RNA-seq using multi-LLM consensus

COBRApy is a package for constraint-based modeling of metabolic networks.

Combined RNA and ATAC Footprint Training of Gene Regulatory Network