Volcano plots for differential expression in R. Reads DESeq2, edgeR and limma output directly; highlight genes of interest and compose gene tables with gt.
A Snakemake workflow and MrBiomics module for performing and visualizing differential analyses of NGS data powered by the R package limma.
A Snakemake workflow and MrBiomics module for performing differential expression analyses (DEA) on (multimodal) sc/snRNA-seq data powered by the R package Seurat.
A complete bioinformatics pipeline (FastQC, fastp, HISAT2, featureCounts, DESeq2) for RNA-Seq DGE analysis of Klebsiella pneumoniae (WT vs. ΞcpxR).
Template R code for bioinformatics analysis pipeline of transcriptomic Illumina datasets
Automatic descriptor selection and volcano curve generation
Interactive Transcriptomics & DEG Visualization Dashboard
A shiny app for custom analyzes of preprocessed omics data
Useful R functions for Multi-omics analyses
Transparent statistical pipeline for identifying biomarkers associated with neurological disease progression. Spearman correlations, Mann-Whitney group comparisons, volcano plots, and FDR correction.
Plotting Crystal, Glass, and Vesicle normalised components
a polar representation of multiple volcano plots
Biplots, Volcano plots, PCA plots, Heatmaps and more Computational Genomics data created and visualized during University of Pittsburgh course, Computational Biology (BIOSC1540), with Dr. Miler Lee
Bioinformatics and statistical analysis of peer-reviewed papers in Dr. Martha Bhattacharya's lab at the University of Arizona. Overlaps with Itch, Endo, and Hippo repos
Analyse d'expression différentielle de gènes avec le logiciel R
This project visualizes Treatment-Emergent Adverse Events(TEAE) in a single graph.
Reusable R/Bash scripts for RNA-Seq (DESeq2), VCF filtering, and multi-omics visualization (heatmaps, volcano plots)
Bayesian volcano plots bring together the explicit treatment of uncertainty in Bayesian models and the familiar visualization of volcano plots
𧬠CNI is a Python toolkit for analyzing and visualizing RNA-seq data with a focus on cellular networks and pathway analysis. Create volcano plots, heatmaps, PCA plots, and more from Excel datasets. πππ
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